Detailed information of SNP:
|
SNP ID:
sf0408289044(Gbrowse)
Chromosome: chr04 Position: 8289044 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.24% | 41.76% |
| All Indica | 789 | 87.33% | 12.67% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 367 | 84.74% | 15.26% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408289044 | T->C | LOC_Os04g14780(LOC_Os04g14780.1) | Synonymous |