Detailed information of SNP:
|
SNP ID:
sf0408289460(Gbrowse)
Chromosome: chr04 Position: 8289460 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.71% | 40.29% |
| All Indica | 790 | 88.48% | 11.52% |
| All Japonica | 490 | 9.39% | 90.61% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 90 | 42.22% | 57.78% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408289460 | A->G | LOC_Os04g14780(LOC_Os04g14780.1) | Non-Synonymous SNP |