Detailed information of SNP:
|
SNP ID:
sf0408289980(Gbrowse)
Chromosome: chr04 Position: 8289980 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 57.27% | 42.73% |
| All Indica | 779 | 84.08% | 15.92% |
| All Japonica | 487 | 10.68% | 89.32% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 367 | 78.20% | 21.80% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 86 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408289980 | T->C | LOC_Os04g14780(LOC_Os04g14780.1) | Synonymous |