Detailed information of SNP:
|
SNP ID:
sf0408290032(Gbrowse)
Chromosome: chr04 Position: 8290032 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 57.64% | 42.36% |
| All Indica | 777 | 86.23% | 13.77% |
| All Japonica | 492 | 9.15% | 90.85% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 365 | 83.01% | 16.99% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408290032 | A->G | LOC_Os04g14780(LOC_Os04g14780.1) | Non-Synonymous SNP |