Detailed information of SNP:
|
SNP ID:
sf0408290073(Gbrowse)
Chromosome: chr04 Position: 8290073 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 98.12% | 1.88% |
| All Indica | 792 | 99.24% | 0.76% |
| All Japonica | 472 | 96.19% | 3.81% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 73 | 76.71% | 23.29% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408290073 | C->T | LOC_Os04g14780(LOC_Os04g14780.1) | Synonymous |