Detailed information of SNP:
|
SNP ID:
sf0408290088(Gbrowse)
Chromosome: chr04 Position: 8290088 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 92.20% | 7.80% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408290088 | T->C | LOC_Os04g14780(LOC_Os04g14780.1) | Synonymous |