Detailed information of SNP:



SNP ID: sf0408302407(Gbrowse)

Chromosome: chr04

Position: 8302407
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1349 95.33% 4.67%
All Indica799 100.00% 0.00%
All Japonica428 85.28% 14.72%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica277 77.98% 22.02%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate57 98.25% 1.75%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0408302407 A->T INTERGENIC None