Detailed information of SNP:
|
SNP ID:
sf0408341921(Gbrowse)
Chromosome: chr04 Position: 8341921 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 79.97% | 20.03% |
| All Indica | 760 | 71.32% | 28.68% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 355 | 77.75% | 22.25% |
| Indica II | 206 | 52.91% | 47.09% |
| Indica Intermediate | 199 | 78.89% | 21.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408341921 | C->G | LOC_Os04g14840(LOC_Os04g14840.1) | INTRON |