Detailed information of SNP:
|
SNP ID:
sf0408355752(Gbrowse)
Chromosome: chr04 Position: 8355752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.51% | 37.49% |
| All Indica | 796 | 35.68% | 64.32% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 17.96% | 82.04% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408355752 | C->T | INTERGENIC | None |