Detailed information of SNP:
|
SNP ID:
sf0408357590(Gbrowse)
Chromosome: chr04 Position: 8357590 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 94.38% | 5.62% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 490 | 85.31% | 14.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 90 | 35.56% | 64.44% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408357590 | A->T | INTERGENIC | None |