Detailed information of SNP:
|
SNP ID:
sf0408362656(Gbrowse)
Chromosome: chr04 Position: 8362656 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 55.90% | 44.10% |
| All Indica | 751 | 31.16% | 68.84% |
| All Japonica | 493 | 93.71% | 6.29% |
| Aus | 61 | 45.90% | 54.10% |
| Indica I | 352 | 32.39% | 67.61% |
| Indica II | 204 | 26.47% | 73.53% |
| Indica Intermediate | 195 | 33.85% | 66.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408362656 | T->C | INTERGENIC | None |