Detailed information of SNP:
|
SNP ID:
sf0408362956(Gbrowse)
Chromosome: chr04 Position: 8362956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 79.90% | 20.10% |
| All Indica | 770 | 65.71% | 34.29% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 361 | 59.00% | 41.00% |
| Indica II | 206 | 71.84% | 28.16% |
| Indica Intermediate | 203 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408362956 | C->T | LOC_Os04g14880(LOC_Os04g14880.1) | Non-Synonymous SNP |