Detailed information of SNP:
|
SNP ID:
sf0408376187(Gbrowse)
Chromosome: chr04 Position: 8376187 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.87% | 3.13% |
| All Indica | 789 | 95.06% | 4.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408376187 | C->T | LOC_Os04g14890(LOC_Os04g14890.1) | INTRON |