Detailed information of SNP:
|
SNP ID:
sf0408376204(Gbrowse)
Chromosome: chr04 Position: 8376204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 54.50% | 45.50% |
| All Indica | 762 | 80.31% | 19.69% |
| All Japonica | 488 | 9.43% | 90.57% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 358 | 76.82% | 23.18% |
| Indica II | 202 | 83.17% | 16.83% |
| Indica Intermediate | 202 | 83.66% | 16.34% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 86 | 43.02% | 56.98% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408376204 | T->C | LOC_Os04g14890(LOC_Os04g14890.1) | INTRON |