Detailed information of SNP:
|
SNP ID:
sf0408379372(Gbrowse)
Chromosome: chr04 Position: 8379372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 98.42% | 1.58% |
| All Indica | 781 | 97.57% | 2.43% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408379372 | C->T | LOC_Os04g14900(LOC_Os04g14900.1) | SNPs that introduce stop codons |