Detailed information of SNP:
|
SNP ID:
sf0408387992(Gbrowse)
Chromosome: chr04 Position: 8387992 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 97.30% | 2.70% |
| All Indica | 789 | 97.47% | 2.53% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408387992 | C->T | INTERGENIC | None |