Detailed information of SNP:
|
SNP ID:
sf0408388582(Gbrowse)
Chromosome: chr04 Position: 8388582 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 60.00% | 40.00% |
| All Indica | 785 | 85.10% | 14.90% |
| All Japonica | 491 | 14.87% | 85.13% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 89 | 62.92% | 37.08% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408388582 | T->G | LOC_Os04g14920(LOC_Os04g14920.1) | Non-Synonymous SNP |