Detailed information of SNP:
|
SNP ID:
sf0408405994(Gbrowse)
Chromosome: chr04 Position: 8405994 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.63% | 6.37% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408405994 | G->A | LOC_Os04g14970(LOC_Os04g14970.1) | INTRON |