Detailed information of SNP:
|
SNP ID:
sf0408406452(Gbrowse)
Chromosome: chr04 Position: 8406452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.64% | 6.36% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408406452 | C->T | LOC_Os04g14970(LOC_Os04g14970.1) | INTRON |