Detailed information of SNP:
|
SNP ID:
sf0408407351(Gbrowse)
Chromosome: chr04 Position: 8407351 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 97.12% | 2.88% |
| All Indica | 768 | 95.44% | 4.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 97.80% | 2.20% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408407351 | C->G | INTERGENIC | None |