Detailed information of SNP:
|
SNP ID:
sf0408426336(Gbrowse)
Chromosome: chr04 Position: 8426336 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 66.15% | 33.85% |
| All Indica | 787 | 93.39% | 6.61% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408426336 | T->C | INTERGENIC | None |