Detailed information of SNP:
|
SNP ID:
sf0408428467(Gbrowse)
Chromosome: chr04 Position: 8428467 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 66.62% | 33.38% |
| All Indica | 780 | 94.62% | 5.38% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408428467 | A->G | INTERGENIC | None |