Detailed information of SNP:
|
SNP ID:
sf0408438986(Gbrowse)
Chromosome: chr04 Position: 8438986 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 72.23% | 27.77% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 488 | 26.43% | 73.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 330 | 7.88% | 92.12% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 7 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408438986 | A->G | INTERGENIC | None |