Detailed information of SNP:
|
SNP ID:
sf0408477841(Gbrowse)
Chromosome: chr04 Position: 8477841 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 75.51% | 24.49% |
| All Indica | 797 | 62.48% | 37.52% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408477841 | A->G | LOC_Os04g15590(LOC_Os04g15590.1) | Non-Synonymous SNP |