Detailed information of SNP:
|
SNP ID:
sf0408479355(Gbrowse)
Chromosome: chr04 Position: 8479355 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 62.40% | 37.60% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 426 | 9.86% | 90.14% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 285 | 6.67% | 93.33% |
| Tropical Japonica | 88 | 4.55% | 95.45% |
| Japonica Intermediate | 53 | 35.85% | 64.15% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408479355 | C->T | INTERGENIC | None |