Detailed information of SNP:
|
SNP ID:
sf0408490666(Gbrowse)
Chromosome: chr04 Position: 8490666 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 96.32% | 3.68% |
| All Indica | 769 | 97.14% | 2.86% |
| All Japonica | 472 | 94.92% | 5.08% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 199 | 94.97% | 5.03% |
| Indica Intermediate | 199 | 96.98% | 3.02% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 75 | 78.67% | 21.33% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408490666 | C->T | LOC_Os04g15620(LOC_Os04g15620.1) | Synonymous |