Detailed information of SNP:
|
SNP ID:
sf0408519273(Gbrowse)
Chromosome: chr04 Position: 8519273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 73.74% | 26.26% |
| All Indica | 790 | 63.67% | 36.33% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 206 | 53.40% | 46.60% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408519273 | C->T | INTERGENIC | None |