Detailed information of SNP:
|
SNP ID:
sf0408596980(Gbrowse)
Chromosome: chr04 Position: 8596980 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 86.97% | 13.03% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 368 | 67.93% | 32.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 218 | 51.83% | 48.17% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 77.19% | 22.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408596980 | T->C | LOC_Os04g15850(LOC_Os04g15850.1) | Synonymous |