Detailed information of SNP:



SNP ID: sf0408629633(Gbrowse)

Chromosome: chr04

Position: 8629633
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1416 91.74% 8.26%
All Indica799 100.00% 0.00%
All Japonica494 76.92% 23.08%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 68.36% 31.64%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate65 92.31% 7.69%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0408629633 G->T LOC_Os04g15910(LOC_Os04g15910.1) Non-Synonymous SNP