Detailed information of SNP:
|
SNP ID:
sf0408648673(Gbrowse)
Chromosome: chr04 Position: 8648673 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 93.31% | 6.69% |
| All Indica | 735 | 91.16% | 8.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 356 | 100.00% | 0.00% |
| Indica II | 188 | 74.47% | 25.53% |
| Indica Intermediate | 191 | 91.10% | 8.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408648673 | T->C | LOC_Os04g15930(LOC_Os04g15930.1) | INTRON |