Detailed information of SNP:
|
SNP ID:
sf0408650628(Gbrowse)
Chromosome: chr04 Position: 8650628 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.42% | 30.58% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408650628 | T->C | INTERGENIC | None |