Detailed information of SNP:
|
SNP ID:
sf0408653716(Gbrowse)
Chromosome: chr04 Position: 8653716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 89.45% | 10.55% |
| All Indica | 695 | 81.87% | 18.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 329 | 86.63% | 13.37% |
| Indica II | 191 | 72.77% | 27.23% |
| Indica Intermediate | 175 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408653716 | G->A | LOC_Os04g15944(LOC_Os04g15944.1) | SNPs that introduce stop codons |