Detailed information of SNP:
|
SNP ID:
sf0408815994(Gbrowse)
Chromosome: chr04 Position: 8815994 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 97.11% | 2.89% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 463 | 91.36% | 8.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 87.21% | 12.79% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408815994 | C->G | LOC_Os04g16240(LOC_Os04g16240.1) | Non-Synonymous SNP |