Detailed information of SNP:
|
SNP ID:
sf0408859270(Gbrowse)
Chromosome: chr04 Position: 8859270 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 95.39% | 4.61% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 468 | 86.54% | 13.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 80.58% | 19.42% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408859270 | G->A | LOC_Os04g16314(LOC_Os04g16314.1) | Non-Synonymous SNP |