Detailed information of SNP:
|
SNP ID:
sf0408961265(Gbrowse)
Chromosome: chr04 Position: 8961265 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 95.19% | 4.81% |
| All Indica | 745 | 92.89% | 7.11% |
| All Japonica | 489 | 99.39% | 0.61% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 352 | 95.45% | 4.55% |
| Indica II | 198 | 89.39% | 10.61% |
| Indica Intermediate | 195 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 97.67% | 2.33% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408961265 | G->A | INTERGENIC | None |