Detailed information of SNP:
|
SNP ID:
sf0408990858(Gbrowse)
Chromosome: chr04 Position: 8990858 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 75.85% | 24.15% |
| All Indica | 784 | 61.61% | 38.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 80.70% | 19.30% |
| Indica II | 204 | 48.04% | 51.96% |
| Indica Intermediate | 207 | 40.58% | 59.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408990858 | C->G | LOC_Os04g16540(LOC_Os04g16540.1) | INTRON |