Detailed information of SNP:
|
SNP ID:
sf0409018155(Gbrowse)
Chromosome: chr04 Position: 9018155 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.80% | 30.20% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409018155 | A->G | LOC_Os04g16590(LOC_Os04g16590.1) | Non-Synonymous SNP |