Detailed information of SNP:
|
SNP ID:
sf0409216461(Gbrowse)
Chromosome: chr04 Position: 9216461 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 93.17% | 6.83% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 472 | 85.17% | 14.83% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 72 | 33.33% | 66.67% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409216461 | A->G | INTERGENIC | None |