Detailed information of SNP:
|
SNP ID:
sf0409227893(Gbrowse)
Chromosome: chr04 Position: 9227893 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 93.23% | 6.77% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 440 | 80.00% | 20.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 284 | 71.83% | 28.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 87.10% | 12.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409227893 | T->A | INTERGENIC | None |