Detailed information of SNP:
|
SNP ID:
sf0409260386(Gbrowse)
Chromosome: chr04 Position: 9260386 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1136 | 52.64% | 47.36% |
| All Indica | 589 | 12.39% | 87.61% |
| All Japonica | 490 | 99.18% | 0.82% |
| Aus | 28 | 67.86% | 32.14% |
| Indica I | 330 | 4.55% | 95.45% |
| Indica II | 136 | 22.79% | 77.21% |
| Indica Intermediate | 123 | 21.95% | 78.05% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 2 | 0.00% | 100.00% |
| Intermediate | 27 | 74.07% | 25.93% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409260386 | A->G | LOC_Os04g16940(LOC_Os04g16940.1) | INTRON |