Detailed information of SNP:
|
SNP ID:
sf0409308617(Gbrowse)
Chromosome: chr04 Position: 9308617 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 89.63% | 10.37% |
| All Indica | 702 | 80.48% | 19.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 301 | 56.48% | 43.52% |
| Indica II | 201 | 99.50% | 0.50% |
| Indica Intermediate | 200 | 97.50% | 2.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409308617 | T->C | INTERGENIC | None |