Detailed information of SNP:



SNP ID: sf0409309381(Gbrowse)

Chromosome: chr04

Position: 9309381
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 70.54% 29.46%
All Indica799 98.37% 1.63%
All Japonica497 20.52% 79.48%
Aus67 100.00% 0.00%
Indica I375 98.40% 1.60%
Indica II213 97.18% 2.82%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 4.18% 95.82%
Tropical Japonica94 80.85% 19.15%
Japonica Intermediate68 17.65% 82.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0409309381 T->C INTERGENIC None