Detailed information of SNP:
|
SNP ID:
sf0409313868(Gbrowse)
Chromosome: chr04 Position: 9313868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.66% | 8.34% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 494 | 79.55% | 20.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409313868 | C->T | INTERGENIC | None |