Detailed information of SNP:
|
SNP ID:
sf0409357843(Gbrowse)
Chromosome: chr04 Position: 9357843 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 93.45% | 6.55% |
| All Indica | 679 | 91.61% | 8.39% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 56 | 67.86% | 32.14% |
| Indica I | 346 | 99.71% | 0.29% |
| Indica II | 173 | 76.88% | 23.12% |
| Indica Intermediate | 160 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409357843 | G->A | INTERGENIC | None |