Detailed information of SNP:
|
SNP ID:
sf0409437361(Gbrowse)
Chromosome: chr04 Position: 9437361 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 66.62% | 33.38% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 480 | 11.88% | 88.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 82 | 53.66% | 46.34% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409437361 | T->C | INTERGENIC | None |