Detailed information of SNP:
|
SNP ID:
sf0409466609(Gbrowse)
Chromosome: chr04 Position: 9466609 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.16% | 29.84% |
| All Indica | 795 | 47.67% | 52.33% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 22.99% | 77.01% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 208 | 68.27% | 31.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409466609 | T->A | LOC_Os04g17280(LOC_Os04g17280.1) | Non-Synonymous SNP |