Detailed information of SNP:
|
SNP ID:
sf0409486427(Gbrowse)
Chromosome: chr04 Position: 9486427 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 69.95% | 30.05% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 482 | 15.98% | 84.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 3.01% | 96.99% |
| Tropical Japonica | 83 | 71.08% | 28.92% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409486427 | T->C | INTERGENIC | None |