Detailed information of SNP:
|
SNP ID:
sf0409498505(Gbrowse)
Chromosome: chr04 Position: 9498505 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 69.97% | 30.03% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 492 | 17.89% | 82.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409498505 | G->A | INTERGENIC | None |