Detailed information of SNP:
|
SNP ID:
sf0409558449(Gbrowse)
Chromosome: chr04 Position: 9558449 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 50.67% | 49.33% |
| All Indica | 791 | 19.22% | 80.78% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 371 | 22.64% | 77.36% |
| Indica II | 210 | 25.71% | 74.29% |
| Indica Intermediate | 210 | 6.67% | 93.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409558449 | A->C | INTERGENIC | None |