Detailed information of SNP:
|
SNP ID:
sf0409561972(Gbrowse)
Chromosome: chr04 Position: 9561972 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 65.36% | 34.64% |
| All Indica | 785 | 88.54% | 11.46% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 364 | 83.24% | 16.76% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409561972 | A->T | INTERGENIC | None |